CompressComplex.h

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// # CompressComplex.h: Virtual column engine to scale a table Complex array
// # Copyright (C) 2001,2002,2003
// # Associated Universities, Inc. Washington DC, USA.
// #
// # This library is free software; you can redistribute it and/or modify it
// # under the terms of the GNU Library General Public License as published by
// # the Free Software Foundation; either version 2 of the License, or (at your
// # option) any later version.
// #
// # This library is distributed in the hope that it will be useful, but WITHOUT
// # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
// # FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Library General Public
// # License for more details.
// #
// # You should have received a copy of the GNU Library General Public License
// # along with this library; if not, write to the Free Software Foundation,
// # Inc., 675 Massachusetts Ave, Cambridge, MA 02139, USA.
// #
// # Correspondence concerning AIPS++ should be addressed as follows:
// #        Internet email: casa-feedback@nrao.edu.
// #        Postal address: AIPS++ Project Office
// #                        National Radio Astronomy Observatory
// #                        520 Edgemont Road
// #                        Charlottesville, VA 22903-2475 USA
 
#ifndef TABLES_COMPRESSCOMPLEX_H
#define TABLES_COMPRESSCOMPLEX_H
 
// # Includes
#include <casacore/casa/aips.h>
#include <casacore/tables/DataMan/BaseMappedArrayEngine.h>
#include <casacore/tables/Tables/ScalarColumn.h>
#include <casacore/casa/Arrays/Array.h>
#include <casacore/casa/BasicSL/Complex.h>
 
namespace casacore {  // # NAMESPACE CASACORE - BEGIN
 
// <summary>
// Virtual column engine to scale a table Complex array
// </summary>
 
// <use visibility=export>
 
// <reviewed reviewer="UNKNOWN" date="before2004/08/25" tests="tCompressComplex.cc">
// </reviewed>
 
// <prerequisite>
// # Classes you should understand before using this one.
//   <li> VirtualColumnEngine
//   <li> VirtualArrayColumn
// </prerequisite>
 
// <synopsis>
// CompressComplex is a virtual column engine which scales an array
// of one type to another type to save disk storage.
// This resembles the classic AIPS compress method which scales the
// data from Complex to int.
// The scale factor and offset values can be given in two ways:
// <ul>
//  <li> As a fixed values which is used for all arrays in the column.
//       These values have to be given when constructing of the engine.
//  <li> As the name of a column. In this way each array in the
//         column has its own scale and offset value.
//         By default it uses auto-scaling (see below).
//         Otherwise the scale and offset value in a row must be put
//         before the array is put and should not be changed anymore.
// </ul>
// Auto-scaling means that the engine will determine the scale
// and offset value itself when an array (or a slice) is put.
// It does it by mapping the values in the array to the range [-32767,32767].
// At each put the scale/offset values are changed as needed.
// Note that with auto-scaling <src>putSlice</src> can be somewhat
// slower, because the entire array might need to be rescaled.
//
// As in FITS the scale and offset values are used as:
// <br><src> True_value = Stored_value * scale + offset; </src>
//
// An engine object should be used for one column only, because the stored
// column name is part of the engine. If it would be used for more than
// one column, they would all share the same stored column.
// When the engine is bound to a column, it is checked if the name
// of that column matches the given virtual column name.
//
// The engine can be used for a column containing any kind of array
// (thus direct or indirect, fixed or variable shaped)) as long as the
// virtual array can be stored in the stored array. Thus a fixed shaped
// virtual can use a variable shaped stored, but not vice versa.
// A fixed shape indirect virtual can use a stored with direct arrays.
//
// This class can also serve as an example of how to implement
// a virtual column engine.
// </synopsis>
 
// <motivation>
// This class allows to store data in a smaller representation.
// It is needed to resemble the classic AIPS compress option.
//
// Because the engine can serve only one column, it was possible to
// combine the engine and the column functionality in one class.
// </motivation>
 
// <example>
// <srcblock>
// // Create the table description and 2 columns with indirect arrays in it.
// // The Int column will be stored, while the double will be
// // used as virtual.
// TableDesc tableDesc ("", TableDesc::Scratch);
// tableDesc.addColumn (ArrayColumnDesc<Int> ("storedArray"));
// tableDesc.addColumn (ArrayColumnDesc<Complex> ("virtualArray"));
// tableDesc.addColumn (ScalarColumnDesc<Complex> ("scale"));
// tableDesc.addColumn (ScalarColumnDesc<Float> ("offset"));
//
// // Create a new table using the table description.
// SetupNewTable newtab (tableDesc, "tab.data", Table::New);
//
// // Create the array scaling engine (with auto-scale)
// // and bind it to the Complex column.
// CompressComplex scalingEngine("virtualArray", "storedArray",
//                               "scale", "offset");
// newtab.bindColumn ("virtualArray", scalingEngine);
// // Create the table.
// Table table (newtab);
//
// // Store a 3-D array (with dim. 2,3,4) into each row of the column.
// // The shape of each array in the column is implicitly set by the put
// // function. This will also set the shape of the underlying Int array.
// ArrayColumn data (table, "virtualArray");
// Array<double> someArray(IPosition(4,2,3,4));
// someArray = 0;
// for (rownr_t i=0, i<10; i++) {          // table will have 10 rows
//     table.addRow();
//     data.put (i, someArray)
// }
// </srcblock>
// </example>
 
class CompressComplex : public BaseMappedArrayEngine<Complex, Int> {
 public:
  // Construct an engine to scale all arrays in a column with
  // the given offset and scale factor.
  // StoredColumnName is the name of the column where the scaled
  // data will be put and must have data type Int.
  // The virtual column using this engine must have data type Complex.
  CompressComplex(const String& virtualColumnName, const String& storedColumnName, Float scale,
                  Float offset = 0);
 
  // Construct an engine to scale the arrays in a column.
  // The scale and offset values are taken from a column with
  // the given names. In that way each array has its own scale factor
  // and offset value.
  // An exception is thrown if these columns do not exist.
  // VirtualColumnName is the name of the virtual column and is used to
  // check if the engine gets bound to the correct column.
  // StoredColumnName is the name of the column where the scaled
  // data will be put and must have data type Int.
  // The virtual column using this engine must have data type Complex.
  CompressComplex(const String& virtualColumnName, const String& storedColumnName,
                  const String& scaleColumnName, const String& offsetColumnName,
                  Bool autoScale = True);
 
  // Construct from a record specification as created by getmanagerSpec().
  CompressComplex(const Record& spec);
 
  // Destructor is mandatory.
  ~CompressComplex();
 
  // Assignment is not needed and therefore forbidden
  CompressComplex& operator=(const CompressComplex&) = delete;
 
  // Return the type name of the engine (i.e. its class name).
  virtual String dataManagerType() const;
 
  // Get the name given to the engine (is the virtual column name).
  virtual String dataManagerName() const;
 
  // Record a record containing data manager specifications.
  virtual Record dataManagerSpec() const;
 
  // Return the name of the class.
  // This includes the names of the template arguments.
  static String className();
 
  // Register the class name and the static makeObject "constructor".
  // This will make the engine known to the table system.
  static void registerClass();
 
 protected:
  // Copy constructor is only used by clone() and derived class.
  // (so it is made protected).
  CompressComplex(const CompressComplex&);
 
 private:
  // Clone the engine object.
  virtual DataManager* clone() const;
 
 protected:
  // Initialize the object for a new table.
  // It defines the keywords containing the engine parameters.
  virtual void create64(rownr_t initialNrrow);
 
 private:
  // Preparing consists of setting the writable switch and
  // adding the initial number of rows in case of create.
  // Furthermore it reads the keywords containing the engine parameters.
  virtual void prepare();
 
  // Reopen the engine for read/write access.
  // It makes the column writable if the underlying column is writable.
  virtual void reopenRW();
 
  // Add rows to the table.
  // If auto-scaling, it initializes the scale column with 0
  // to indicate that no data has been processed yet.
  virtual void addRowInit(rownr_t startRow, rownr_t nrrow);
 
  // Get an array in the given row.
  // This will scale and offset from the underlying array.
  virtual void getArray(rownr_t rownr, Array<Complex>& array);
 
  // Put an array in the given row.
  // This will scale and offset to the underlying array.
  virtual void putArray(rownr_t rownr, const Array<Complex>& array);
 
  // Get a section of the array in the given row.
  // This will scale and offset from the underlying array.
  virtual void getSlice(rownr_t rownr, const Slicer& slicer, Array<Complex>& array);
 
  // Put into a section of the array in the given row.
  // This will scale and offset to the underlying array.
  virtual void putSlice(rownr_t rownr, const Slicer& slicer, const Array<Complex>& array);
 
  // Get an entire column.
  // This will scale and offset from the underlying array.
  virtual void getArrayColumn(Array<Complex>& array);
 
  // Put an entire column.
  // This will scale and offset to the underlying array.
  virtual void putArrayColumn(const Array<Complex>& array);
 
  // Get some array values in the column.
  // This will scale and offset from the underlying array.
  virtual void getArrayColumnCells(const RefRows& rownrs, Array<Complex>& data);
 
  // Put some array values in the column.
  // This will scale and offset to the underlying array.
  virtual void putArrayColumnCells(const RefRows& rownrs, const Array<Complex>& data);
 
  // Get a section of all arrays in the column.
  // This will scale and offset from the underlying array.
  virtual void getColumnSlice(const Slicer& slicer, Array<Complex>& array);
 
  // Put a section of all arrays in the column.
  // This will scale and offset to the underlying array.
  virtual void putColumnSlice(const Slicer& slicer, const Array<Complex>& array);
 
  // Get a section of some arrays in the column.
  // This will scale and offset from the underlying array.
  virtual void getColumnSliceCells(const RefRows& rownrs, const Slicer& slicer,
                                   Array<Complex>& data);
 
  // Put into a section of some arrays in the column.
  // This will scale and offset to the underlying array.
  virtual void putColumnSliceCells(const RefRows& rownrs, const Slicer& slicer,
                                   const Array<Complex>& data);
 
  // Scale and/or offset target to array.
  // This is meant when reading an array from the stored column.
  // It optimizes for scale=1 and/or offset=0.
  virtual void scaleOnGet(Float scale, Float offset, Array<Complex>& array,
                          const Array<Int>& target);
 
  // Scale and/or offset array to target.
  // This is meant when writing an array into the stored column.
  // It optimizes for scale=1 and/or offset=0.
  virtual void scaleOnPut(Float scale, Float offset, const Array<Complex>& array,
                          Array<Int>& target);
 
  // Scale and/or offset target to array for the entire column.
  // When the scale and offset are fixed, it will do the entire array.
  // Otherwise it iterates through the array and applies the scale
  // and offset per row.
  void scaleColumnOnGet(Array<Complex>& array, const Array<Int>& target);
 
  // Scale and/or offset array to target for the entire column.
  // When the scale and offset are fixed, it will do the entire array.
  // Otherwise it iterates through the array and applies the scale
  // and offset per row.
  void scaleColumnOnPut(const Array<Complex>& array, Array<Int>& target);
 
 protected:
  // # Now define the data members.
  String scaleName_p;                   // # name of scale column
  String offsetName_p;                  // # name of offset column
  Float scale_p;                        // # fixed scale factor
  Float offset_p;                       // # fixed offset value
  Bool fixed_p;                         // # scale/offset is fixed
  Bool autoScale_p;                     // # determine scale/offset automatically
  ScalarColumn<Float>* scaleColumn_p;   // # column with scale value
  ScalarColumn<Float>* offsetColumn_p;  // # column with offset value
  Array<Int> buffer_p;                  // # buffer to avoid Array constructions
                                        // # (makes multi-threading harder)
 
  // Get the scale value for this row.
  Float getScale(rownr_t rownr);
 
  // Get the offset value for this row.
  Float getOffset(rownr_t rownr);
 
  // Find minimum and maximum from the array data.
  // NaN and infinite values are ignored. If no values are finite,
  // minimum and maximum are set to NaN.
  virtual void findMinMax(Float& minVal, Float& maxVal, const Array<Complex>& array) const;
 
  // Make scale and offset from the minimum and maximum of the array data.
  // If minVal is NaN, scale is set to 0.
  void makeScaleOffset(Float& scale, Float& offset, Float minVal, Float maxVal) const;
 
  // Put a part of an array in a row using given scale/offset values.
  void putPart(rownr_t rownr, const Slicer& slicer, const Array<Complex>& array, Float scale,
               Float offset);
 
  // Fill the array part into the full array and put it using the
  // given min/max values.
  void putFullPart(rownr_t rownr, const Slicer& slicer, Array<Complex>& fullArray,
                   const Array<Complex>& partArray, Float minVal, Float maxVal);
 
 public:
  // Define the "constructor" to construct this engine when a
  // table is read back.
  // This "constructor" has to be registered by the user of the engine.
  // If the engine is commonly used, its registration can be added
  // to the registerAllCtor function in DataManager.cc.
  // That function gets automatically invoked by the table system.
  static DataManager* makeObject(const String& dataManagerType, const Record& spec);
};
 
// <summary>
// Virtual column engine to scale a table Complex array for Single Dish data
// </summary>
 
// <use visibility=export>
 
// <reviewed reviewer="UNKNOWN" date="before2004/08/25" tests="tCompressComplex.cc">
// </reviewed>
 
// <prerequisite>
// # Classes you should understand before using this one.
//   <li> CompressComplex
// </prerequisite>
 
// <synopsis>
// CompressComplexSD is similar to CompressComplex, but compresses
// in a slighty different way optimized for single dish data.
// Usually the imaginary part of single dish data is 0, so the scaling
// is optimized for it.
// <br>If the imaginary part is 0, the real part is scaled with 15 bits
// extra to get a higher precision. The least significant bit is set to 0
// indicating the imag==0.
// <br>If the imaginary part is not 0, the real part is scaled normally.
// The imaginary part is scaled with 1 bit less. The least significant bit
// is set to 1 indicating that imag!=0.
// </synopsis>
 
// <motivation>
// This class is created on top of CompressComplex to cope with SD data
// in a better way. Using CompressComplex often makes the imag part non-zero
// if it is scaled as 0.
// </motivation>
 
// <example>
// <srcblock>
// // Create the table description and 2 columns with indirect arrays in it.
// // The Int column will be stored, while the double will be
// // used as virtual.
// TableDesc tableDesc ("", TableDesc::Scratch);
// tableDesc.addColumn (ArrayColumnDesc<Int> ("storedArray"));
// tableDesc.addColumn (ArrayColumnDesc<Complex> ("virtualArray"));
// tableDesc.addColumn (ScalarColumnDesc<Complex> ("scale"));
// tableDesc.addColumn (ScalarColumnDesc<Float> ("offset"));
//
// // Create a new table using the table description.
// SetupNewTable newtab (tableDesc, "tab.data", Table::New);
//
// // Create the array scaling engine (with auto-scale)
// // and bind it to the Complex column.
// CompressComplexSD scalingEngine("virtualArray", "storedArray",
//                                 "scale", "offset");
// newtab.bindColumn ("virtualArray", scalingEngine);
// // Create the table.
// Table table (newtab);
//
// // Store a 3-D array (with dim. 2,3,4) into each row of the column.
// // The shape of each array in the column is implicitly set by the put
// // function. This will also set the shape of the underlying Int array.
// ArrayColumn data (table, "virtualArray");
// Array<double> someArray(IPosition(4,2,3,4));
// someArray = 0;
// for (rownr_t i=0, i<10; i++) {          // table will have 10 rows
//     table.addRow();
//     data.put (i, someArray)
// }
// </srcblock>
// </example>
 
class CompressComplexSD : public CompressComplex {
 public:
  // Construct an engine to scale all arrays in a column with
  // the given offset and scale factor.
  // StoredColumnName is the name of the column where the scaled
  // data will be put and must have data type Int.
  // The virtual column using this engine must have data type Complex.
  CompressComplexSD(const String& virtualColumnName, const String& storedColumnName, Float scale,
                    Float offset = 0);
 
  // Construct an engine to scale the arrays in a column.
  // The scale and offset values are taken from a column with
  // the given names. In that way each array has its own scale factor
  // and offset value.
  // An exception is thrown if these columns do not exist.
  // VirtualColumnName is the name of the virtual column and is used to
  // check if the engine gets bound to the correct column.
  // StoredColumnName is the name of the column where the scaled
  // data will be put and must have data type Int.
  // The virtual column using this engine must have data type Complex.
  CompressComplexSD(const String& virtualColumnName, const String& storedColumnName,
                    const String& scaleColumnName, const String& offsetColumnName,
                    Bool autoScale = True);
 
  // Construct from a record specification as created by getmanagerSpec().
  CompressComplexSD(const Record& spec);
 
  // Destructor is mandatory.
  ~CompressComplexSD();
 
  // Assignment is not needed and therefore forbidden
  CompressComplexSD& operator=(const CompressComplexSD&) = delete;
 
  // Return the type name of the engine (i.e. its class name).
  virtual String dataManagerType() const;
 
  // Return the name of the class.
  // This includes the names of the template arguments.
  static String className();
 
  // Register the class name and the static makeObject "constructor".
  // This will make the engine known to the table system.
  static void registerClass();
 
 private:
  // Copy constructor is only used by clone().
  // (so it is made private).
  CompressComplexSD(const CompressComplexSD&);
 
  // Clone the engine object.
  virtual DataManager* clone() const;
 
  // Initialize the object for a new table.
  // It defines the keywords containing the engine parameters.
  virtual void create64(rownr_t initialNrrow);
 
  // Scale and/or offset target to array.
  // This is meant when reading an array from the stored column.
  // It optimizes for scale=1 and/or offset=0.
  virtual void scaleOnGet(Float scale, Float offset, Array<Complex>& array,
                          const Array<Int>& target);
 
  // Scale and/or offset array to target.
  // This is meant when writing an array into the stored column.
  // It optimizes for scale=1 and/or offset=0.
  virtual void scaleOnPut(Float scale, Float offset, const Array<Complex>& array,
                          Array<Int>& target);
 
  // Find minimum and maximum from the array data.
  // NaN and infinite values and zero imaginary parts are ignored.
  // If no values are finite, minimum and maximum are set to NaN.
  virtual void findMinMax(Float& minVal, Float& maxVal, const Array<Complex>& array) const;
 
 public:
  // Define the "constructor" to construct this engine when a
  // table is read back.
  // This "constructor" has to be registered by the user of the engine.
  // If the engine is commonly used, its registration can be added
  // to the registerAllCtor function in DataManager.cc.
  // That function gets automatically invoked by the table system.
  static DataManager* makeObject(const String& dataManagerType, const Record& spec);
};
 
inline Float CompressComplex::getScale(rownr_t rownr) {
  return (fixed_p ? scale_p : (*scaleColumn_p)(rownr));
}
inline Float CompressComplex::getOffset(rownr_t rownr) {
  return (fixed_p ? offset_p : (*offsetColumn_p)(rownr));
}
 
}  // namespace casacore
 
#endif